Journal: Journal of Proteomics

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Elsevier

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ISSN

1874-3919
1876-7737

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Publications1 - 10 of 41
  • Evolution of organelle-associated protein profiling
    Item type: Review Article
    Yan, Wei; Aebersold, Ruedi; Raines, Elaine W. (2009)
    Journal of Proteomics
  • On the acquisition of +1 charge states during high-throughput proteomics
    Item type: Journal Article
    Nesatyy, Victor J.; Groh, Ksenia; Nestler, Holger; et al. (2009)
    Journal of Proteomics
  • mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry
    Item type: Journal Article
    Teo, Guoshou; Kim, Sinae; Tsou, Chih-chiang; et al. (2015)
    Journal of Proteomics
  • Proceedings of the EuBIC-MS developers meeting 2023
    Item type: Other Journal Item
    Beltrao, Pedro; Van Den Bossche, Tim; Gabriels, Ralf; et al. (2024)
    Journal of Proteomics
    The 2023 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers Meeting was held from January 15th to January 20th, 2023, in Congressi Stefano Franscin at Monte Verità in Ticino, Switzerland. The participants were scientists and developers working in computational mass spectrometry (MS), metabolomics, and proteomics. The 5-day program was split between introductory keynote lectures and parallel hackathon sessions focusing on “Artificial Intelligence in proteomics” to stimulate future directions in the MS-driven omics areas. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts and actively contribute to highly relevant research projects. We successfully produced several new tools applicable to the proteomics community by improving data analysis and facilitating future research.
  • Activity-based proteomics
    Item type: Journal Article
    Wiedl, T.; Arni, S.; Roschitzki, B.; et al. (2011)
    Journal of Proteomics
  • Discovery of serum proteomic biomarkers for prediction of response to infliximab (a monoclonal anti-TNF antibody) treatment in rheumatoid arthritis
    Item type: Journal Article
    Ortea, Ignacio; Roschitzki, Bernd; Ovalles, Juan Gabriel; et al. (2012)
    Journal of Proteomics
  • Quantitative in-depth analysis of the dynamic secretome of activated Jurkat T-cells
    Item type: Journal Article
    Bonzon-Kulichenko, Elena; Martinez-Martinez, Sara; Trevisan-Herraz, Marco; et al. (2011)
    Journal of Proteomics
  • From target discovery to clinical trials with armed antibody products
    Item type: Journal Article
    Elia, Giuliano; Fugmann, Tim; Neri, Dario (2014)
    Journal of Proteomics
  • Domestic animal proteomics in the 21st century: A global retrospective and viewpoint analysis
    Item type: Review Article
    Almeida, André M.; Ali, Syed Azmal; Ceciliani, Fabrizio; et al. (2021)
    Journal of Proteomics
    Animal production and health are of significant economic importance, particularly regarding the world food supply. Animal and veterinary sciences have evolved immensely in the past six decades, particularly in genetics, nutrition, housing, management and health. To address major challenges such as those posed by climate change or metabolic disorders, it is of utmost importance to use state-of-the-art research tools. Proteomics and the other post-genomic tools (transcriptomics or metabolomics) are among them. Proteomics has experienced a considerable development over the last decades. This brought developments to different scientific fields. The use and adoption of proteomics tools in animal and veterinary sciences has some limitations (database availability or access to proteomics platforms and funding). As a result, proteomics' use by animal science researchers varies across the globe. In this viewpoint article, we focus on the developments of domestic animal proteomics over the last decade in different regions of the globe and how the researchers have coped with such challenges. In the second part of the article, we provide examples of funding, educational and laboratory establishment initiatives designed to foster the development of (animal-based) proteomics. International scientific collaboration is a definitive and key feature in the development and advancement of domestic animal proteomics. Significance: Animal production and health are very important for food supply worldwide particularly as a source of proteinaceous foods. Animal and veterinary sciences have evolved immensely in the last decades. In order to address the major contemporary challenges facing animal and veterinary sciences, it is of utmost importance to use state-of-the-art research tools such as Proteomics and other Omics. Herein, we focus on the major developments in domestic animal proteomics worldwide during the last decade and how different regions of the world have used the technology in this specific research field. We address also major international efforts aiming to increase the research output in this area and highlight the importance of international cooperation to address specific problems inherent to domestic animal proteomics.
  • Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism
    Item type: Journal Article
    Stekhoven, Daniel J.; Omasits, Ulrich; Quebatte, Maxime; et al. (2014)
    Journal of Proteomics
Publications1 - 10 of 41