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dc.contributor.author
Gómez, Harold F.
dc.contributor.author
Hucka, Michael
dc.contributor.author
Keating, Sarah M.
dc.contributor.author
Nudelman, German
dc.contributor.author
Iber, Dagmar
dc.contributor.author
Sealfon, Stuart C.
dc.date.accessioned
2023-06-08T14:15:20Z
dc.date.available
2017-06-12T01:42:01Z
dc.date.available
2023-06-08T14:15:20Z
dc.date.issued
2016-06
dc.identifier.issn
1367-4803
dc.identifier.issn
1460-2059
dc.identifier.other
10.1093/bioinformatics/btw056
en_US
dc.identifier.uri
http://hdl.handle.net/20.500.11850/113537
dc.identifier.doi
10.3929/ethz-b-000113537
dc.description.abstract
MATLAB is popular in biological research for creating and simulating models that use ordinary differential equations (ODEs). However, sharing or using these models outside of MATLAB is often problematic. A community standard such as Systems Biology Markup Language (SBML) can serve as a neutral exchange format, but translating models from MATLAB to SBML can be challenging—especially for legacy models not written with translation in mind. We developed MOCCASIN (Model ODE Converter for Creating Automated SBML INteroperability) to help. MOCCASIN can convert ODE-based MATLAB models of biochemical reaction networks into the SBML format.
en_US
dc.format
application/pdf
en_US
dc.language.iso
en
en_US
dc.publisher
Oxford University Press
en_US
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/
dc.title
MOCCASIN: converting MATLAB ODE models to SBML
en_US
dc.type
Journal Article
dc.rights.license
Creative Commons Attribution 4.0 International
dc.date.published
2016-02-09
ethz.journal.title
Bioinformatics
ethz.journal.volume
32
en_US
ethz.journal.issue
12
en_US
ethz.journal.abbreviated
Bioinformatics
ethz.pages.start
1905
en_US
ethz.pages.end
1906
en_US
ethz.version.deposit
publishedVersion
en_US
ethz.identifier.wos
ethz.identifier.scopus
ethz.publication.place
Oxford
en_US
ethz.publication.status
published
en_US
ethz.leitzahl
ETH Zürich::00002 - ETH Zürich::00012 - Lehre und Forschung::00007 - Departemente::02060 - Dep. Biosysteme / Dep. of Biosystems Science and Eng.::03791 - Iber, Dagmar / Iber, Dagmar
en_US
ethz.leitzahl.certified
ETH Zürich::00002 - ETH Zürich::00012 - Lehre und Forschung::00007 - Departemente::02060 - Dep. Biosysteme / Dep. of Biosystems Science and Eng.::03791 - Iber, Dagmar / Iber, Dagmar
ethz.date.deposited
2017-06-12T01:42:32Z
ethz.source
ECIT
ethz.identifier.importid
imp593654298d41434986
ethz.ecitpid
pub:175233
ethz.eth
yes
en_US
ethz.availability
Open access
en_US
ethz.rosetta.installDate
2017-07-13T12:24:37Z
ethz.rosetta.lastUpdated
2024-02-02T23:58:12Z
ethz.rosetta.versionExported
true
ethz.COinS
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