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dc.contributor.author
Wickert, Jörg
dc.contributor.author
Lorsbach, Tim
dc.contributor.author
Gütlein, Martin
dc.contributor.author
Schmid, Emanuel
dc.contributor.author
Latino, Diogo
dc.contributor.author
Kramer, Stefan
dc.contributor.author
Fenner, Kathrin
dc.date.accessioned
2019-04-04T13:22:54Z
dc.date.available
2017-06-12T02:43:46Z
dc.date.available
2019-04-04T13:22:54Z
dc.date.issued
2016-01-04
dc.identifier.issn
1362-4962
dc.identifier.issn
0301-5610
dc.identifier.other
10.1093/nar/gkv1229
en_US
dc.identifier.uri
http://hdl.handle.net/20.500.11850/114221
dc.identifier.doi
10.3929/ethz-b-000114221
dc.description.abstract
The University of Minnesota Biocatalysis/Biodegradation Database and Pathway Prediction System (UM-BBD/PPS) has been a unique resource covering microbial biotransformation pathways of primarily xenobiotic chemicals for over 15 years. This paper introduces the successor system, enviPath (The Environmental Contaminant Biotransformation Pathway Resource), which is a complete redesign and reimplementation of UM-BBD/PPS. enviPath uses the database from the UM-BBD/PPS as a basis, extends the use of this database, and allows users to include their own data to support multiple use cases. Relative reasoning is supported for the refinement of predictions and to allow its extensions in terms of previously published, but not implemented machine learning models. User access is simplified by providing a REST API that simplifies the inclusion of enviPath into existing workflows. An RDF database is used to enable simple integration with other databases. enviPath is publicly available at https://envipath.org with free and open access to its core data.
en_US
dc.format
application/pdf
en_US
dc.language.iso
en
en_US
dc.publisher
Oxford University Press
en_US
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/
dc.title
enviPath - The environmental contaminant biotransformation pathway resource
en_US
dc.type
Journal Article
dc.rights.license
Creative Commons Attribution 4.0 International
dc.date.published
2015-11-17
ethz.journal.title
Nucleic Acids Research
ethz.journal.volume
44
en_US
ethz.journal.issue
D1
en_US
ethz.journal.abbreviated
Nucleic Acids Res.
ethz.pages.start
D502
en_US
ethz.pages.end
D508
en_US
ethz.version.deposit
publishedVersion
en_US
ethz.identifier.wos
ethz.identifier.scopus
ethz.identifier.nebis
000038633
ethz.publication.place
Oxford
en_US
ethz.publication.status
published
en_US
ethz.date.deposited
2017-06-12T02:44:43Z
ethz.source
ECIT
ethz.identifier.importid
imp59365439a356314764
ethz.ecitpid
pub:175995
ethz.eth
yes
en_US
ethz.availability
Open access
en_US
ethz.rosetta.installDate
2017-07-20T18:58:34Z
ethz.rosetta.lastUpdated
2021-02-15T04:15:42Z
ethz.rosetta.versionExported
true
ethz.COinS
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