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dc.contributor.author
Fornes, Oriol
dc.contributor.author
Castro-Mondragon, Jaime A.
dc.contributor.author
Khan, Aziz
dc.contributor.author
Van der Lee, Robin
dc.contributor.author
Zhang, Xi
dc.contributor.author
Richmond, Phillip A.
dc.contributor.author
Modi, Bhavi P.
dc.contributor.author
Correard, Solenne
dc.contributor.author
Gheorghe, Marius
dc.contributor.author
Baranašić, Damir
dc.contributor.author
Santana-Garcia, Walter
dc.contributor.author
Tan, Ge
dc.contributor.author
Chèneby, Jeanne
dc.contributor.author
Ballester, Benoit
dc.contributor.author
Parcy, Francois
dc.contributor.author
Sandelin, Albin
dc.contributor.author
Lenhard, Boris
dc.contributor.author
Wasserman, Wyeth W.
dc.contributor.author
Mathelier, Anthony
dc.date.accessioned
2020-01-20T12:09:28Z
dc.date.available
2020-01-19T22:29:23Z
dc.date.available
2020-01-20T12:09:28Z
dc.date.issued
2020-01-08
dc.identifier.issn
1362-4962
dc.identifier.issn
0301-5610
dc.identifier.other
10.1093/nar/gkz1001
en_US
dc.identifier.uri
http://hdl.handle.net/20.500.11850/391788
dc.identifier.doi
10.3929/ethz-b-000391788
dc.description.abstract
JASPAR (http://jaspar.genereg.net) is an open-access database of curated, non-redundant transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for TFs across multiple species in six taxonomic groups. In this 8th release of JASPAR, the CORE collection has been expanded with 245 new PFMs (169 for vertebrates, 42 for plants, 17 for nematodes, 10 for insects, and 7 for fungi), and 156 PFMs were updated (125 for vertebrates, 28 for plants and 3 for insects). These new profiles represent an 18% expansion compared to the previous release. JASPAR 2020 comes with a novel collection of unvalidated TF-binding profiles for which our curators did not find orthogonal supporting evidence in the literature. This collection has a dedicated web form to engage the community in the curation of unvalidated TF-binding profiles. Moreover, we created a Q&A forum to ease the communication between the user community and JASPAR curators. Finally, we updated the genomic tracks, inference tool, and TF-binding profile similarity clusters. All the data is available through the JASPAR website, its associated RESTful API, and through the JASPAR2020 R/Bioconductor package.
en_US
dc.format
application/pdf
en_US
dc.language.iso
en
en_US
dc.publisher
Oxford University Press
en_US
dc.rights.uri
http://creativecommons.org/licenses/by-nc/4.0/
dc.title
JASPAR 2020: update of the open-access database of transcription factor binding profiles
en_US
dc.type
Journal Article
dc.rights.license
Creative Commons Attribution-NonCommercial 4.0 International
dc.date.published
2019-11-08
ethz.journal.title
Nucleic Acids Research
ethz.journal.volume
48
en_US
ethz.journal.issue
D1
en_US
ethz.journal.abbreviated
Nucleic Acids Res.
ethz.pages.start
D87
en_US
ethz.pages.end
D92
en_US
ethz.version.deposit
publishedVersion
en_US
ethz.identifier.wos
ethz.identifier.scopus
ethz.publication.place
Oxford
en_US
ethz.publication.status
published
en_US
ethz.date.deposited
2020-01-19T22:29:35Z
ethz.source
SCOPUS
ethz.eth
yes
en_US
ethz.availability
Open access
en_US
ethz.rosetta.installDate
2020-01-20T12:09:40Z
ethz.rosetta.lastUpdated
2021-02-15T07:25:51Z
ethz.rosetta.versionExported
true
ethz.COinS
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