Morphologically annotated single-cell images of human induced pluripotent stem cells for deep learning
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Creator
Date
2022-11Type
- Data Collection
ETH Bibliography
yes
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Abstract
We have generated two datasets containing images of different cellular states of human induced pluripotent stem cells (iPSCs). We stained iPSCs with different markers
(incl. DAPI and bright-field) caputuring different biological properties and subsequently used high-content automated imaging to generate the imaging datasets. For each
cellular state we generated five-channel sub-images centred around individual cells based on their nuclear DAPI signal. The respective single-cell sub-images were then
manually annotated according to their respective cellular state. Show more
Permanent link
https://doi.org/10.3929/ethz-b-000581447Contributors
Contact person: Snijder, Berend
Contact person: Pfaendler, Ramon

Data collector: Pfaendler, Ramon

Producer: Pfaendler, Ramon

Project leader: Pfaendler, Ramon

Project manager: Snijder, Berend

Project member: Pfaendler, Ramon

Project member: Snijder, Berend

Project member: Hanimann, Jacob
Researcher: Pfaendler, Ramon

Researcher: Snijder, Berend

Researcher: Hanimann, Jacob
Research group: Snijder, Berend

Rights holder: Pfaendler, Ramon

Rights holder: Snijder, Berend

Publisher
ETH ZurichGeographic location
Place nameZurich
Date collected
2020-10-01/2022-11-01Date created
2020-10-01/2022-11-01Subject
High content screening; Deep learning; Induced pluripotent stem cellsOrganisational unit
09595 - Snijder, Berend / Snijder, Berend
09595 - Snijder, Berend / Snijder, Berend
Funding
ETH-28 20-1 - Surveying the functional and phenotypic landscape of pluripotent cells across individuals (ETHZ)
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