Journal: Computerized medical imaging and graphics

Abbreviation

Comput Med Imaging Graph

Publisher

Elsevier

Journal Volumes

ISSN

0895-6111

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2022 - 20232
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Publications 1 - 2 of 2
  • Synthetically trained convolutional neural networks for improved tensor estimation from free-breathing cardiac DTI
    Item type: Journal Article
    Weine, Jonathan; van Gorkum, Robbert J.H.; Stoeck, Christian T.; et al. (2022)
    Computerized medical imaging and graphics
    Cardiac diffusion tensor imaging (cDTI) provides invaluable information about the state of myocardial microstructure. For further clinical dissemination, free-breathing acquisitions are desired, which however require image registration prior to tensor estimation. Due to the varying contrast and the intrinsically low signal-to-noise ratio (SNR), registration is very challenging and thus can introduce additional errors in the tensor estimation. In the work at hand it is hypothesized, that by incorporating spatial information and physiologically plausible priors into the fitting algorithm, the robustness of diffusion tensor estimation can be improved. To this end, we present a parameterized pipeline to generate synthetic data, that captures the statistics including spatial correlations of diffusion tensors and motion of the heart. The synthetic data is used to train a residual convolutional neural network (CNN) to estimate diffusion tensors from unregistered in-vivo cDTI data. Using in-silico data, the synthetically trained CNN is demonstrated to yield increased tensor estimation accuracy and precision when compared to conventional registration followed by least squares fitting. The network outputs fewer outliers especially at the myocardial borders. In-vivo feasibility using data from five healthy subjects demonstrates the utility of the synthetically trained network. The in-vivo results predicted by the synthetically trained CNN are found to be consistent with the registered least-squares estimates while showing fewer outliers and reduced noise. Even in low SNR regimes, the network results in robust tensor estimation, enabling scan time reduction by reduced-average acquisition in-vivo. Finally, to investigate the network's capability of discriminating between healthy and lesioned tissue, the in-vivo data was artificially augmented showing preserved classification of tissue states based on diffusion metrics.
  • CardioVision: A fully automated deep learning package for medical image segmentation and reconstruction generating digital twins for patients with aortic stenosis
    Item type: Journal Article
    Rouhollahi, Amir; Willi, James Noel; Haltmeier, Sandra; et al. (2023)
    Computerized medical imaging and graphics
    Aortic stenosis (AS) is the most prevalent heart valve disease in western countries that poses a significant public health challenge due to the lack of a medical treatment to prevent valve calcification. Given the aging population demographic, the prevalence of AS is projected to rise, resulting in a progressively significant healthcare and economic burden. While surgical aortic valve replacement (SAVR) has been the gold standard approach, the less invasive transcatheter aortic valve replacement (TAVR) is poised to become the dominant method for high- and medium-risk interventions. Computational simulations using patient-specific models, have opened new research avenues for optimizing emerging devices and predicting clinical outcomes. The traditional techniques of generating digital replicas of patients’ aortic root, native valve, and calcification are time-consuming and labor-intensive processes requiring specialized tools and expertise in anatomy. Alternatively, deep learning models, such as the U-Net architecture, have emerged as reliable and fully automated methods for medical image segmentation. Two-dimensional U-Nets have been shown to produce comparable or more accurate results than trained clinicians’ manual segmentation while significantly reducing computational costs. In this study, we have developed a fully automatic AI tool capable of reconstructing the digital twin geometry and analyzing the calcification distribution on the aortic valve. The developed automatic segmentation package enables the modeling of patient-specific anatomies, which can then be used to simulate virtual interventional procedures, optimize emerging prosthetic devices, and predict clinical outcomes.
Publications 1 - 2 of 2