DNAshapeR: An R/Bioconductor package for DNA shape prediction and feature encoding
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Date
2016-04
Publication Type
Journal Article
ETH Bibliography
yes
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Abstract
DNAshapeR predicts DNA shape features in an ultra-fast, high-throughput manner from genomic sequencing data. The package takes either nucleotide sequence or genomic coordinates as input and generates various graphical representations for visualization and further analysis. DNAshapeR further encodes DNA sequence and shape features as user-defined combinations of k-mer and DNA shape features. The resulting feature matrices can be readily used as input of various machine learning software packages for further modeling studies.
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Publication status
published
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Book title
Journal / series
Volume
32 (8)
Pages / Article No.
1211 - 1213
Publisher
Oxford University Press