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Fingerprinting Breast Cancer vs. Normal Mammary Cells by Mass Spectrometric Analysis of Volatiles
(2014)Scientific ReportsThere is increasing interest in the development of noninvasive diagnostic methods for early cancer detection, to improve the survival rate and quality of life of cancer patients. Identification of volatile metabolic compounds may provide an approach for noninvasive early diagnosis of malignant diseases. Here we analyzed the volatile metabolic signature of human breast cancer cell lines versus normal human mammary cells. Volatile compounds ...Journal Article -
Analysis of the “Sonar Hopf” Cochlea
(2011)SensorsThe “Sonar Hopf” cochlea is a recently much advertised engineering design of an auditory sensor. We analyze this approach based on a recent description by its inventors Hamilton, Tapson, Rapson, Jin, and van Schaik, in which they exhibit the “Sonar Hopf” model, its analysis and the corresponding hardware in detail. We identify problems in the theoretical formulation of the model and critically examine the claimed coherence between the ...Journal Article -
Characterization of Flexible Copolymer Optical Fibers for Force Sensing Applications
(2013)SensorsIn this paper, different polymer optical fibres for applications in force sensing systems in textile fabrics are reported. The proposed method is based on the deflection of the light in fibre waveguides. Applying a force on the fibre changes the geometry and affects the wave guiding properties and hence induces light loss in the optical fibre. Fibres out of three different elastic and transparent copolymer materials were successfully ...Journal Article -
Determination of Jet Energy Calibration and Transverse Momentum Resolution in CMS
(2011)Journal of InstrumentationMeasurements of the jet energy calibration and transverse momentum resolution in CMS are presented, performed with a data sample collected in proton-proton collisions at a centre-of-mass energy of 7TeV, corresponding to an integrated luminosity of 36pb−1. The transverse momentum balance in dijet and γ/Z+jets events is used to measure the jet energy response in the CMS detector, as well as the transverse momentum resolution. The results ...Journal Article -
Global climate targets and future consumption level: An evaluation of the required GHG intensity
(2013)Environmental Research LettersDiscussion and analysis on international climate policy often focuses on the rather abstract level of total national and regional greenhouse gas (GHG) emissions. At some point, however, emission reductions need to be translated to consumption level. In this article, we evaluate the implications of the strictest IPCC representative concentration pathway for key consumption categories (food, travel, shelter, goods, services). We use IPAT ...Journal Article -
Dissecting specific and global transcriptional regulation of bacterial gene expression
(2013)Molecular Systems BiologyGene expression is regulated by specific transcriptional circuits but also by the global expression machinery as a function of growth. Simultaneous specific and global regulation thus constitutes an additional—but often neglected—layer of complexity in gene expression. Here, we develop an experimental‐computational approach to dissect specific and global regulation in the bacterium Escherichia coli. By using fluorescent promoter reporters, ...Journal Article -
Single-cell analysis of population context advances RNAi screening at multiple levels
(2012)Molecular Systems BiologyIsogenic cells in culture show strong variability, which arises from dynamic adaptations to the microenvironment of individual cells. Here we study the influence of the cell population context, which determines a single cell's microenvironment, in image‐based RNAi screens. We developed a comprehensive computational approach that employs Bayesian and multivariate methods at the single‐cell level. We applied these methods to 45 RNA interference ...Journal Article -
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast
(2013)Molecular Systems BiologyThe diauxic shift in Saccharomyces cerevisiae is an ideal model to study how eukaryotic cells readjust their metabolism from glycolytic to gluconeogenic operation. In this work, we generated time‐resolved physiological data, quantitative metabolome (69 intracellular metabolites) and proteome (72 enzymes) profiles. We found that the diauxic shift is accomplished by three key events that are temporally organized: (i) a reduction in the ...Journal Article -
Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis
(2013)Molecular Systems BiologyOne of the key ways in which microbes are thought to regulate their metabolism is by modulating the availability of enzymes through transcriptional regulation. However, the limited success of efforts to manipulate metabolic fluxes by rewiring the transcriptional network has cast doubt on the idea that transcript abundance controls metabolic fluxes. In this study, we investigate control of metabolic flux in the model bacterium Bacillus ...Journal Article -
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
(2012)Molecular Systems BiologyLeaves have a central role in plant energy capture and carbon conversion and therefore must continuously adapt their development to prevailing environmental conditions. To reveal the dynamic systems behaviour of leaf development, we profiled Arabidopsis leaf number six in depth at four different growth stages, at both the end‐of‐day and end‐of‐night, in plants growing in two controlled experimental conditions: short‐day conditions with ...Journal Article