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Spatial variation of microtubule depolymerization in large asters
(2021)Molecular Biology of the CellMicrotubule plus-end depolymerization rate is a potentially important target of physiological regulation, but it has been challenging to measure, so its role in spatial organization is poorly understood. Here we apply a method for tracking plus ends based on time difference imaging to measure depolymerization rates in large interphase asters growing in Xenopus egg extract. We observed strong spatial regulation of depolymerization rates, ...Journal Article -
Local Arp2/3 dependent actin assembly modulates applied traction force during apCAM adhesion site maturation
(2017)Molecular Biology of the CellHomophilic binding of immunoglobulin superfamily molecules such as the Aplysia cell adhesion molecule (apCAM) leads to actin filament assembly near nascent adhesion sites. Such actin assembly can generate significant localized forces that have not been characterized in the larger context of axon growth and guidance. We used apCAM-coated bead substrates applied to the surface of neuronal growth cones to characterize the development of ...Journal Article -
The soil microbiome influences grapevine-associated microbiota
(2015)mBioGrapevine is a well-studied, economically relevant crop, whose associated bacteria could influence its organoleptic properties. In this study, the spatial and temporal dynamics of the bacterial communities associated with grapevine organs (leaves, flowers, grapes, and roots) and soils were characterized over two growing seasons to determine the influence of vine cultivar, edaphic parameters, vine developmental stage (dormancy, flowering, ...Journal Article -
Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution
(2014)mBioAn outbreak of the fungal pathogen Cryptococcus gattii began in the Pacific Northwest (PNW) in the late 1990s. This outbreak consists of three clonal subpopulations: VGIIa/major, VGIIb/minor, and VGIIc/novel. Both VGIIa and VGIIc are unique to the PNW and exhibit increased virulence. In this study, we sequenced the genomes of isolates from these three groups, as well as global isolates, and analyzed a total of 53 isolates. We found that ...Journal Article -
Multipolar radiation of quantum emitters with nanowire optical antennas
(2013)Nature CommunicationsMultipolar transitions other than electric dipoles are generally too weak to be observed at optical frequencies in single quantum emitters. For example, fluorescent molecules and quantum dots have dimensions much smaller than the wavelength of light and therefore emit predominantly as electric dipoles. Here we demonstrate controlled emission of a quantum dot into multipolar radiation through selective coupling to a linear nanowire antenna. ...Journal Article -
Evolution and functional cross-talk of protein post-translational modifications
(2013)Molecular Systems BiologyProtein post-translational modifications (PTMs) allow the cell to regulate protein activity and play a crucial role in the response to changes in external conditions or internal states. Advances in mass spectrometry now enable proteome wide characterization of PTMs and have revealed a broad functional role for a range of different types of modifications. Here we review advances in the study of the evolution and function of PTMs that were ...Journal Article -
The genome of the simian and human malaria parasite Plasmodium knowlesi
(2008)NaturePlasmodium knowlesi is an intracellular malaria parasite whose natural vertebrate host is Macaca fascicularis (the ‘kra’ monkey); however, it is now increasingly recognized as a significant cause of human malaria, particularly in southeast Asia1,2. Plasmodium knowlesi was the first malaria parasite species in which antigenic variation was demonstrated3, and it has a close phylogenetic relationship to Plasmodium vivax4, the second most ...Journal Article