Search
Results
-
psupertime: supervised pseudotime inference for single cell RNA-seq data with sequential labels
(2019)bioRxivSingle cell RNA-seq has been successfully combined with pseudotime inference methods to investigate biological processes which have sequential labels, such as time series studies of development and differentiation. Pseudotime methods developed to date ignore the labels, and where there is substantial variation in the data not associated with the labels (such as cell cycle variation or batch effects), they can fail to find relevant genes. ...Working Paper