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Guidelines for reporting the use of mass spectrometry in proteomics
(2008)Nature BiotechnologyJournal Article -
A database of mass spectrometric assays for the yeast proteome
(2008)Nature MethodsJournal Article -
Building Consensus Spectral Libraries for Peptide Identification in Proteomics
(2008)Nature MethodsJournal Article -
A mouse plasma peptide atlas as a resource for disease proteomics
(2008)Genome BiologyWe present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms ...Journal Article -
Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring
(2008)Molecular & Cellular ProteomicsIn many studies, particularly in the field of systems biology, it is essential that identical protein sets are precisely quantified in multiple samples such as those representing differentially perturbed cell states. The high degree of reproducibility required for such experiments has not been achieved by classical mass spectrometry-based proteomics methods. In this study we describe the implementation of a targeted quantitative approach ...Journal Article