High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
Abstract
We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.
Publication status
publishedExternal links
Book title
2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)Pages / Article No.
Publisher
IEEEEvent
Organisational unit
09483 - Mutlu, Onur / Mutlu, Onur
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