Time-series alignment by non-negative multiple generalized canonical correlation analysis
Buhmann, Joachim M.
- Conference Paper
Rights / licenseCreative Commons Attribution 2.0 Generic
Background Quantitative analysis of differential protein expressions requires to align temporal elution measurements from liquid chromatography coupled to mass spectrometry (LC/MS). We propose multiple Canonical Correlation Analysis (mCCA) as a method to align the non-linearly distorted time scales of repeated LC/MS experiments in a robust way. Results Multiple canonical correlation analysis is able to map several time series to a consensus time scale. The alignment function is learned in a supervised fashion. We compare our approach with previously published methods for aligning mass spectrometry data on a large proteomics dataset. The proposed method significantly increases the number of proteins that are identified as being differentially expressed in different biological samples. Conclusion Jointly aligning multiple liquid chromatography/mass spectrometry samples by mCCA substantially increases the detection rate of potential bio-markers which significantly improves the interpretability of LC/MS data Show more
Journal / seriesBMC Bioinformatics
Pages / Article No.
SubjectFalse discovery rate; Canonical correlation analysis; Ridge regression; Thin plate spline; Differential protein expression
Organisational unit03659 - Buhmann, Joachim M. / Buhmann, Joachim M.
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